| Protein ZmMADS21 | |
|---|---|
|
ZmMADS21 is a protein in the MADS family.
|
|
| Information | |
| TF Name: | ZmMADS21 |
| Species: | Maize |
| TF Family: | MADS |
| Gene Name(Synonym): | MADS21 |
| Uniprot ID: | A0A1D6PDQ1 |
Protein ZmMADS21
ZmMADS21 is a protein in the MADS family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00319 | PF01486 | |
| Zm00001eb303440_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d019187 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019187 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019187 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d019187 | PChIPseq |  |
sequence | fimo | position |
| Zm00001d019188 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019188 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019188 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d019188 | PChIPseq |  |
sequence | fimo | position |
| Zm00001d019189 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019189 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019189 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d019189 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMADS21 is the regulator
Interactions where ZmMADS21 is the target
Expand
Zm00001eb303440_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00319 |
|
| PF01486 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
ATGACTCTTAGAGATCATAATATTC...
ATGACTCTTAGAGATCATAATATTCCTTCTAATGGGGATATCAATGAAACATATGTTCTTGTAGGTTGAATAGAAGAGAAGAGTAGAAGCACCAAGCTGTACCAATGGGGCGTGGAAAAGTAGAGCTGAAGAAGATTGAGAATCCAACAAACCGCCAAGTTACCTTCTCCAAGAGGCGGATGGGGTTGTTCAAGAAGGCAAACGAGGTAGCCATTCTTTGTGATGCGCAAATCGGAGTCATCATATTCTCTGGCAGTGGCAGGATGTACGAGTACTCCAGCCCTCCATGGAGAATAGCAAGCGTCTTTGACAGGTACCTGAAAGCCCCTAGCACCCGTTTTGAGGAGATGGACATCCAGCAGAAAATCGTCCAGGAGATGACTAGGATGAATGATGAGAGGAACAGGCTGAGGATGATCATGGCGCAGTACATGGCGGAGGACCTGGCCTCGTTCTCCGTGCAGGATCTGAGCAACCTTGAGCAGCAGATCGAGTTCTCGTTGTACAAAGTTCGCCTCAGGAAGCAAGAGCTACTCGACCAGTAGCTGCTCGAGATCCGCCAAAGGATCAAGGAGCGGATAAGCCTTCTTCCGAGAACTCTTTGATGTAATAATCAAGGAGCGGATAAGCCTTCTTCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGCAACAGCAACCCGTAGCGCCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGGTACGGTGAACTGATGGCTACCTGCTAGCAGCCGATTACTGGATAATCTTGGTGTATATGGTGTATGAATCGAAGTTAAGGTTGGCAATTTTTATGCTGGACACCATAAAGATTC
AC233912.1_FGT001 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELLDQ
Nucleotide Sequence
Copy to clipboard
Expand
ATGACTCTTAGAGATCATAATATTC...
ATGACTCTTAGAGATCATAATATTCCTTCTAATGGGGATATCAATGAAACATATGTTCTTGTAGGTTGAATAGAAGAGAAGAGTAGAAGCACCAAGCTGTACCAATGGGGCGTGGAAAAGTAGAGCTGAAGAAGATTGAGAATCCAACAAACCGCCAAGTTACCTTCTCCAAGAGGCGGATGGGGTTGTTCAAGAAGGCAAACGAGGTAGCCATTCTTTGTGATGCGCAAATCGGAGTCATCATATTCTCTGGCAGTGGCAGGATGTACGAGTACTCCAGCCCTCCATGGAGAATAGCAAGCGTCTTTGACAGGTACCTGAAAGCCCCTAGCACCCGTTTTGAGGAGATGGACATCCAGCAGAAAATCGTCCAGGAGATGACTAGGATGAATGATGAGAGGAACAGGCTGAGGATGATCATGGCGCAGTACATGGCGGAGGACCTGGCCTCGTTCTCCGTGCAGGATCTGAGCAACCTTGAGCAGCAGATCGAGTTCTCGTTGTACAAAGTTCGCCTCAGGAAGCAAGAGCTACTCGACCAGTAGCTGCTCGAGATCCGCCAAAGGATCAAGGAGCGGATAAGCCTTCTTCCGAGAACTCTTTGATGTAATAATCAAGGAGCGGATAAGCCTTCTTCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGCAACAGCAACCCGTAGCGCCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGGTACGGTGAACTGATGGCTACCTGCTAGCAGCCGATTACTGGATAATCTTGGTGTATATGGTGTATGAATCGAAGTTAAGGTTGGCAATTTTTATGCTGGACACCATAAAGATTCAA
Zm00001d019187_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MMDMQQIITKLTTQCSEKAFELELKLADNRVLQEQLLQKKKITLNNNSTKVDISSEKEVDCAQQETIDLKSKLQFKEAKI
EKMKYEHLTREAALTENKLLEEEYKKKLDEANKELSLENDLAACEFLLLS
Nucleotide Sequence
Copy to clipboard
Expand
TTTGGTTTGATAGCTACAAATTTTA...
TTTGGTTTGATAGCTACAAATTTTAATACATAATCCTTGGTGCTCTGCATGAGTTGCATTCAAGCTAAGCAAGGCGTAGCTGCTGCCTAGGTTCCCCGTCCACCGTCCAACGCTTGCAGCTGCATCCCTCTGCCAGCCAGGCGGTGGTGGGTTTAGGGTTTAGGGTTCCTATATGACTGGGATGGAGCACGGGCCGATGTGGCTGCCTGCTTTACCGAATCTGCTCACCTATGTGACTATGTGAGCATGCAGGTGTGGGTTGAGCCGTCGGCGACCAAGGACATGATGGACAAGGTGGAGTAGGTACGACAACGGAGGAAGGCCGAGAAGTCCCTGCTCAGCTTGCAACGAAGGTTGGCTACGACAAGCGCAGAAGAATTGGAGAATAGTGGCTGTCAGAAGACATATGCGAGCCCTGGAAAAAGTGGTGAGGCATCATTTGCTAATGCATCCATGATGGATATGCAGCAGATTATTACGAAATTAACAACTCAGTGTAGTGAGAAGGCTTTTGAGTTAGAGTTAAAGTTAGCTGATAATCGTGTCCTCCAGGAGCAGCTACTACAGAAGAAAAAGATCACGTTGAACAACAACTCAACAAAAGTGGATATATCCTCTGAGAAGGAAGTTGATTGTGCACAACAGGAGACTATTGATTTGAAATCTAAACTTCAGTTCAAGGAAGCTAAAATTGAAAAGATGAAATATGAGCATCTGACGAGGGAGGCTGCTTTGACCGAGAATAAGCTTCTTGAAGAGGAGTACAAGAAAAAGTTAGACGAGGCAAATAAGGAACTATCTCTGGAGAATGATCTAGCAGCATGTGAGTTCTTGTTGCTAAGTTGAAAAGAGGGGTTTTAGATAAATCTGATTTGAGTGTTGATGATGGAACTAAAGTGTAAGGGCGTAGCGATCGCAACACTGTTGTCTCATAATTGGTGTTAATGAAAAATAACATGGTGCTCCACGGAATCTCTACTTTATCTTGTAAGAAGGATTGTTATGTCGGCATAATTTGATTTGCATGTATAATGTCTTCATGCTTTACTTGCCCTTTTGTGAAATGCG
Zm00001d019187_T002 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MRALEKVIITKLTTQCSEKAFELELKLADNRVLQEQLLQKKKITLNNNSTKVDISSEKEVDCAQQETIDLKSKLQFKEAK
IEKMKYEHLTREAALTENKLLEEEYKKKLDEANKELSLENDLAACEFLLLS
Nucleotide Sequence
Copy to clipboard
Expand
GCGTAGCTGCTGCCTAGGTTCCCCG...
GCGTAGCTGCTGCCTAGGTTCCCCGTCCACCGTCCAACGCTTGCAGCTGCATCCCTCTGCCAGCCAGGCGGTGGTGGGTTTAGGGTTTAGGGTTCCTATATGACTGGGATGGAGCACGGGCCGATGTGGCTGCCTGCTTTACCGAATCTGCTCACCTATGTGACTATGTGAGCATGCAGGTGTGGGTTGAGCCGTCGGCGACCAAGGACATGATGGACAAGGTGGAGTAGGTACGACAACGGAGGAAGGCCGAGAAGTCCCTGCTCAGCTTGCAACGAAGGTTGGCTACGACAAGCGCAGAAGAATTGGAGAATAGTGGCTGTCAGAAGACATATGCGAGCCCTGGAAAAAGTGATTATTACGAAATTAACAACTCAGTGTAGTGAGAAGGCTTTTGAGTTAGAGTTAAAGTTAGCTGATAATCGTGTCCTCCAGGAGCAGCTACTACAGAAGAAAAAGATCACGTTGAACAACAACTCAACAAAAGTGGATATATCCTCTGAGAAGGAAGTTGATTGTGCACAACAGGAGACTATTGATTTGAAATCTAAACTTCAGTTCAAGGAAGCTAAAATTGAAAAGATGAAATATGAGCATCTGACGAGGGAGGCTGCTTTGACCGAGAATAAGCTTCTTGAAGAGGAGTACAAGAAAAAGTTAGACGAGGCAAATAAGGAACTATCTCTGGAGAATGATCTAGCAGCATGTGAGTTCTTGTTGCTAAGTTGAAAAGAGGGGTTTTAGATAAATCTGATTTGAGTGTTGATGATGGAACTAAAGTGTAAGGGCGTAGCGATCGCAACACTGTTGTCTCATAATTGGTGTTAATGAAAAATAACATGGTGCTCCACGGAATCTCTACTTTATCTTGTAAGAAGGATTGTTATGTCGGCATAATTTGATTTGCATGTATAATGTCTTCATGCTTTACTTGCCCTTTTGTGAAAT
Zm00001d019188_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MIKKFNPNVWELPEKMSLDALMLEPVNKDFWGYFGFNVKLSGFEATSIYDLLRHFISTCHCLKLGHALESSEMSRTYKAM
RLM
Nucleotide Sequence
Copy to clipboard
Expand
GAAGCTTCTAGAATTTGTACTTCTT...
GAAGCTTCTAGAATTTGTACTTCTTTGACGGGAAACCTTTCATGCATCTGGAAATTGCATGGACATGTTCAGCTCGCACTTGCGAGATGCTTTCCATAGGTGGAGGGGAAAATCAAAAGGGTCATGGATGCACAGATGTTCAAATATTCTAATTCAAGAGTGGAGAAATACGTGTTTGTTAGCAGCAAATGGTGCAAAACTCTCATATCAACATGCTTTGCATCTTACTCCTTCGAAAGTTGATGTTCACAATGATATGTCCGTTTGTCTTGATCTAATTTGTTCCATGGATGATAAAAAAATTCAACCCCAATGTTTGGGAGCTGCCAGAGAAAATGTCACTGGATGCCTTGATGTTGGAACCAGTTAATAAGGATTTTTGGGGTTACTTTGGGTTTAATGTCAAGTTATCTGGCTTTGAAGCAACATCCATTTATGATTTATTAAGGCACTTCATCTCGACATGTCATTGTCTGAAGCTTGGGCATGCCTTGGAAAGTTCAGAGATGAGCAGAACATATAAGGCCATGCGGCTGATGTGA
Zm00001d019189_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MKKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKFFILKRRRKNSLGRSLTLSANAEH
TLCFVSGSKSYSTSSCSRSAKGYATFQSLIRRLIKERISLLPPRPRVQRGERSRSNSNP
Nucleotide Sequence
Copy to clipboard
Expand
ATGAAGAAAATCGTCCAGGAGATGA...
ATGAAGAAAATCGTCCAGGAGATGACTAGGATGAATGATGAGAGGAACAGGCTGAGGATGATCATGGCGCAGTACATGGCGGAGGACCTGGCCTCGTTCTCCGTGCAGGATCTGAGCAACCTTGAGCAGCAGATCGAGTTCTCGTTGTACAAAGTTCGCCTCAGGAAGTTCTTTATCCTAAAAAGAAGACGAAAAAACAGTCTTGGGAGATCCCTCACCCTTAGTGCTAACGCTGAGCACACACTTTGTTTTGTTTCTGGCAGCAAGAGCTACTCGACCAGTAGCTGCTCGAGATCCGCCAAAGGGTACGCAACATTCCAATCTCTGATCCGTCGCTTGATCAAGGAGCGGATAAGCCTTCTTCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGCAACAGCAACCCGTAGCGCCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGGTACGGTGAACTGATGGCTACCTGCTAGCAGCCGATTACTGGATAATCTTGGTGTATATGGTGTATGAATCGAAGTTAAGGTTGGCAATTTTTATGCTGGACACCATAAAGATTCAA
Zm00001d019189_T002 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MSMAIPLEQSITPVLQDFMNLNIFYLPVYYCGGEELMVIRSLLVRVLHGLDKVLEGGAVVMTLRDHNIPSNGDINETYVL
VG
Nucleotide Sequence
Copy to clipboard
Expand
ATGAGCATGGCGATCCCGCTGGAGC...
ATGAGCATGGCGATCCCGCTGGAGCAGTCCATCACGCCGGTGCTTCAGGACTTTATGAATCTCAACATATTCTATCTACCAGTGTATTACTGTGGAGGTGAGGAGCTTATGGTGATCAGGTCGTTGTTAGTAAGGGTTCTTCATGGCCTTGATAAGGTTTTGGAAGGTGGTGCAGTTGTCATGACTCTTAGAGATCATAATATTCCTTCTAATGGGGATATCAATGAAACATATGTTCTTGTAGGTTGAATAGAAGAGAAGAGTAGAAGCACCAAGCTGTACCAATGGGGCGTGGAAAAGTAGAGCTGAAGAAGATTGAGAATCCAACAAACCGCCAAGTTACCTTCTCCAAGAGGCGGATGGGGTTGTTCAAGAAGGCAAACGAGGTAGCCATTCTTTGTGATGCGCAAATCGGAGTCATCATATTCTCTGGCAGTGGCAGGATGTACGAGTACTCCAGCCCTCCATGGAGAATAGCAAGCGTCTTTGACAGGTACCTGAAAGCCCCTAGCACCCGTTTTGAGGAGATGGACATCCAGCAGAAAATCGTCCAGGAGATGACTAGGATGAATGATGAGAGGAACAGGCTGAGGATGATCATGGCGCAGTACATGGCGGAGGACCTGGCCTCGTTCTCCGTGCAGGATCTGAGCAACCTTGAGCAGCAGATCGAGTTCTCGTTGTACAAAGTTCGCCTCAGGAAGCAAGAGCTACTCGACCAGTAGCTGCTCGAGATCCGCCAAAGGATCAAGGAGCGGATAAGCCTTCTTCCGAGAACTCTTTGATGTAATAATCAAGGAGCGGATAAGCCTTCTTCCGCCGCGGCCGAGAGTTCAAAGAGGAGAAAGGAGCCGGAGCAACAGCAACCCGTAGCGCCATGGGCAAAGCTGCTCTCGCAGTGCTCACAGGTACGGTGAACTGATGGCTACCTGCTAGCAGCCGATTACTGGATAATCTTGGTGTATATGGTGTATGAATCGAAGTTAAGGTTGGCAATTTTTATGCTGGACACCATAAAGATTCAA
Zm00001d019189_T003 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MGRGKVELKKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSSPPWRIASVFDRYLKAPSTRFE
EMDIQQVRLILLNQYVAISVFQ
Nucleotide Sequence
Copy to clipboard
Expand
ATGACTCTTAGAGATCATAATATTC...
ATGACTCTTAGAGATCATAATATTCCTTCTAATGGGGATATCAATGAAACATATGTTCTTGTAGGTTGAATAGAAGAGAAGAGTAGAAGCACCAAGCTGTACCAATGGGGCGTGGAAAAGTAGAGCTGAAGAAGATTGAGAATCCAACAAACCGCCAAGTTACCTTCTCCAAGAGGCGGATGGGGTTGTTCAAGAAGGCAAACGAGGTAGCCATTCTTTGTGATGCGCAAATCGGAGTCATCATATTCTCTGGCAGTGGCAGGATGTACGAGTACTCCAGCCCTCCATGGAGAATAGCAAGCGTCTTTGACAGGTACCTGAAAGCCCCTAGCACCCGTTTTGAGGAGATGGACATCCAGCAGGTGCGGCTGATTCTCTTGAACCAATATGTTGCAATCTCTGTTTTCCAGTGA
Copyright © 2023 Grassius.org | Last updated: 2023-06-26